STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_T000400Uncharacterized protein; Belongs to the terpene synthase family. (321 aa)    
Predicted Functional Partners:
B9GK36_POPTR
Uncharacterized protein.
  
     0.528
A0A2K2C512
Uncharacterized protein.
  
     0.526
B9IFZ8_POPTR
AAI domain-containing protein.
  
     0.523
A0A2K2B7F7
Uncharacterized protein.
  
     0.521
A0A3N7HB44
AAI domain-containing protein.
  
     0.517
U5GMV5_POPTR
F-box domain-containing protein.
  
     0.517
A0A2K2C7V4
Uncharacterized protein.
  
     0.515
A0A2K1Z4D2
Uncharacterized protein.
  
     0.511
A0A2K2BSY7
F-box domain-containing protein.
  
     0.511
A0A2K1X4F6
Uncharacterized protein.
  
     0.508
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.