STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5FI08_POPTRGRAS domain-containing protein; Belongs to the GRAS family. (387 aa)    
Predicted Functional Partners:
A0A2K1XV82
Abhydrolase_3 domain-containing protein.
    
 
 0.493
B9GTB2_POPTR
Abhydrolase_3 domain-containing protein.
    
 
 0.493
B9I826_POPTR
Abhydrolase_3 domain-containing protein.
    
 
 0.492
B9MZP2_POPTR
Abhydrolase_3 domain-containing protein.
    
 
 0.492
A0A2K2C6M2
GTD-binding domain-containing protein.
  
     0.476
A0A2K1Y526
Uncharacterized protein.
  
     0.465
B9N7K7_POPTR
C2H2-type domain-containing protein.
  
 
   0.465
B9INJ4_POPTR
Uncharacterized protein.
  
 
   0.464
B9NDT5_POPTR
WRKY domain-containing protein.
  
 
   0.463
U5FIV5_POPTR
NAC domain-containing protein.
  
     0.460
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.