STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5FKD8_POPTRRBR-type E3 ubiquitin transferase. (570 aa)    
Predicted Functional Partners:
A0A2K2AX22
Ubiquitin-like domain-containing protein.
    
  0.729
A9PC21_POPTR
Ubiquitin-like domain-containing protein.
    
  0.729
A0A2K1XCV1
HECT domain-containing protein.
   
 
 0.671
U5G6X6_POPTR
HECT domain-containing protein.
   
 
 0.671
A0A2K2AW64
HECT domain-containing protein.
   
 
 0.643
B9HR64_POPTR
HECT domain-containing protein.
   
 
 0.643
B9I5X1_POPTR
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.605
A0A2K2A282
RING-type domain-containing protein.
    
 0.561
A0A2K2B2M6
RING-type domain-containing protein.
    
 0.561
A9P8V0_POPTR
RING-type domain-containing protein.
    
 0.561
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.