STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5FT01_POPTRUncharacterized protein; Belongs to the sterol desaturase family. (622 aa)    
Predicted Functional Partners:
A9PEC4_POPTR
3-ketoacyl-CoA synthase.
      
 0.669
B9HJ26_POPTR
3-ketoacyl-CoA synthase.
      
 0.659
A0A2K1XYG9
3-ketoacyl-CoA synthase.
      
 0.647
B9H0R8_POPTR
3-ketoacyl-CoA synthase.
      
 0.647
B9HRM7_POPTR
3-ketoacyl-CoA synthase.
      
 0.647
B9ICY9_POPTR
3-ketoacyl-CoA synthase.
      
 0.644
A0A2K1YFJ3
Katanin p80 WD40 repeat-containing subunit B1 homolog; May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays; Belongs to the WD repeat KATNB1 family.
      
 0.623
A0A2K2C3K1
SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.
      
 0.619
B9GH97_POPTR
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.610
B9H6L4_POPTR
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.610
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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