STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5GDW6_POPTRSyntaxin-6_N domain-containing protein. (329 aa)    
Predicted Functional Partners:
POPTR_T022500
Uncharacterized protein.
      
 0.559
A0A2K2CBV6
Uncharacterized protein.
      
 0.559
B9GGV6_POPTR
Uncharacterized protein.
      
 0.514
A0A2K1YFV1
Uncharacterized protein.
      
 0.491
B9H2U6_POPTR
Uncharacterized protein.
      
 0.491
B9H876_POPTR
Uncharacterized protein.
  
     0.466
A0A3N7GS32
FAR1 domain-containing protein.
  
     0.465
A0A3N7GVM6
C2 domain-containing protein.
  
     0.458
B9GU71_POPTR
Uncharacterized protein.
  
     0.458
B9GSP4_POPTR
Uncharacterized protein.
  
     0.451
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.