STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5GP24_POPTRSSD domain-containing protein. (1294 aa)    
Predicted Functional Partners:
A0A2K1ZYE4
BHLH domain-containing protein.
   
 0.857
A0A2K1ZYF1
BHLH domain-containing protein.
   
 0.857
A0A2K1ZYF3
Uncharacterized protein.
   
 0.857
A0A3N7G7Q0
BHLH domain-containing protein.
   
 0.857
A0A3N7GA77
BHLH domain-containing protein.
   
 0.857
B9HAY3_POPTR
BHLH domain-containing protein.
   
 0.857
B9IN64_POPTR
BHLH family protein.
   
 0.857
B9IN67_POPTR
BHLH family protein.
   
 0.857
A0A2K1Y935
Uncharacterized protein.
      
 0.670
A0A2K1Y979
Uncharacterized protein.
      
 0.670
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.