STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U7DWN5_POPTRUncharacterized protein. (91 aa)    
Predicted Functional Partners:
A0A3N7H6J8
ANK_REP_REGION domain-containing protein.
    
  0.488
B9HDY3_POPTR
Methyltransferase.
  
 
  0.469
A0A2K1XK06
Uncharacterized protein.
    
  0.460
A0A3N7FTK7
Uncharacterized protein.
    
  0.460
A0A3N7FWS5
N_BRCA1_IG domain-containing protein.
    
  0.460
A0A2K1XW73
Uncharacterized protein.
    
 0.432
A0A2K1YJW6
Uncharacterized protein.
    
 0.432
U5GUI1_POPTR
Uncharacterized protein.
    
 0.432
A0A2K2A073
MACPF domain-containing protein.
  
  
  0.429
A0A2K2AKU5
Methyltransferase.
  
     0.429
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.