STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ90679.1Outer membrane protein beta-barrel domain-containing protein. (231 aa)    
Predicted Functional Partners:
SFZ92642.1
Protein of unknown function.
  
     0.771
SFZ92059.1
Hypothetical protein.
  
     0.766
SFZ91960.1
Hypothetical protein.
  
     0.764
SFZ92460.1
CarboxypepD_reg-like domain-containing protein.
  
     0.759
SFZ90666.1
Aspartyl protease.
 
     0.750
SFZ92194.1
Hypothetical protein.
  
     0.748
SFZ90429.1
Putative DNA-binding domain-containing protein.
  
     0.736
SFZ92644.1
Hypothetical protein.
  
     0.727
SFZ90793.1
Hypothetical protein.
  
     0.718
SFZ91830.1
Family of unknown function.
  
     0.717
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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