STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ90901.1Outer membrane protein beta-barrel family protein. (901 aa)    
Predicted Functional Partners:
SFZ90900.1
GLPGLI family protein.
 
     0.916
SFZ90899.1
GLPGLI family protein.
 
     0.875
SFZ90010.1
GLPGLI family protein.
  
     0.773
SFZ90014.1
GLPGLI family protein.
  
     0.771
SFZ90019.1
GLPGLI family protein.
  
     0.771
SFZ90021.1
GLPGLI family protein.
  
     0.771
SFZ89990.1
GLPGLI family protein.
  
     0.755
SFZ92453.1
Hypothetical protein.
  
     0.648
SFZ90898.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
     0.603
SFZ89363.1
Hypothetical protein.
  
     0.598
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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