SFZ89346.1 protein (Flaviramulus basaltis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFZ89346.1

Uncharacterized membrane protein. (468 aa)

Predicted Functional Partners:

SFZ89347.1

0.953

SFZ89344.1

0.931

SFZ89343.1

0.919

SFZ89345.1

0.805

SFZ89342.1

0.773

SFZ89348.1

0.624

SFZ94485.1

0.606

SFZ89352.1

0.564

SFZ89350.1

0.520

SFZ89341.1

0.473

Your Current Organism:

Flaviramulus basaltis

NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFZ89341.1	SFZ89342.1	SAMN05428642_101176	SAMN05428642_101177	Acyl-CoA dehydrogenase.	tRNA(Arg) A34 adenosine deaminase TadA.	0.514
SFZ89341.1	SFZ89343.1	SAMN05428642_101176	SAMN05428642_101178	Acyl-CoA dehydrogenase.	Xanthine dehydrogenase small subunit.	0.473
SFZ89341.1	SFZ89344.1	SAMN05428642_101176	SAMN05428642_101179	Acyl-CoA dehydrogenase.	Xanthine dehydrogenase large subunit.	0.571
SFZ89341.1	SFZ89345.1	SAMN05428642_101176	SAMN05428642_101180	Acyl-CoA dehydrogenase.	Allantoinase.	0.473
SFZ89341.1	SFZ89346.1	SAMN05428642_101176	SAMN05428642_101181	Acyl-CoA dehydrogenase.	Uncharacterized membrane protein.	0.473
SFZ89341.1	SFZ89347.1	SAMN05428642_101176	SAMN05428642_101182	Acyl-CoA dehydrogenase.	5-hydroxyisourate hydrolase / 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.	0.473
SFZ89341.1	SFZ89348.1	SAMN05428642_101176	SAMN05428642_101183	Acyl-CoA dehydrogenase.	Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.	0.446
SFZ89342.1	SFZ89341.1	SAMN05428642_101177	SAMN05428642_101176	tRNA(Arg) A34 adenosine deaminase TadA.	Acyl-CoA dehydrogenase.	0.514
SFZ89342.1	SFZ89343.1	SAMN05428642_101177	SAMN05428642_101178	tRNA(Arg) A34 adenosine deaminase TadA.	Xanthine dehydrogenase small subunit.	0.976
SFZ89342.1	SFZ89344.1	SAMN05428642_101177	SAMN05428642_101179	tRNA(Arg) A34 adenosine deaminase TadA.	Xanthine dehydrogenase large subunit.	0.973
SFZ89342.1	SFZ89345.1	SAMN05428642_101177	SAMN05428642_101180	tRNA(Arg) A34 adenosine deaminase TadA.	Allantoinase.	0.773
SFZ89342.1	SFZ89346.1	SAMN05428642_101177	SAMN05428642_101181	tRNA(Arg) A34 adenosine deaminase TadA.	Uncharacterized membrane protein.	0.773
SFZ89342.1	SFZ89347.1	SAMN05428642_101177	SAMN05428642_101182	tRNA(Arg) A34 adenosine deaminase TadA.	5-hydroxyisourate hydrolase / 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.	0.785
SFZ89342.1	SFZ89348.1	SAMN05428642_101177	SAMN05428642_101183	tRNA(Arg) A34 adenosine deaminase TadA.	Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.	0.624
SFZ89343.1	SFZ89341.1	SAMN05428642_101178	SAMN05428642_101176	Xanthine dehydrogenase small subunit.	Acyl-CoA dehydrogenase.	0.473
SFZ89343.1	SFZ89342.1	SAMN05428642_101178	SAMN05428642_101177	Xanthine dehydrogenase small subunit.	tRNA(Arg) A34 adenosine deaminase TadA.	0.976
SFZ89343.1	SFZ89344.1	SAMN05428642_101178	SAMN05428642_101179	Xanthine dehydrogenase small subunit.	Xanthine dehydrogenase large subunit.	0.999
SFZ89343.1	SFZ89345.1	SAMN05428642_101178	SAMN05428642_101180	Xanthine dehydrogenase small subunit.	Allantoinase.	0.823
SFZ89343.1	SFZ89346.1	SAMN05428642_101178	SAMN05428642_101181	Xanthine dehydrogenase small subunit.	Uncharacterized membrane protein.	0.919
SFZ89343.1	SFZ89347.1	SAMN05428642_101178	SAMN05428642_101182	Xanthine dehydrogenase small subunit.	5-hydroxyisourate hydrolase / 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.	0.933