Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFZ90516.1 | truB | SAMN05428642_101982 | SAMN05428642_101465 | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.940 |
SFZ91966.1 | SFZ95183.1 | SAMN05428642_102455 | SAMN05428642_11010 | Small subunit ribosomal protein S1. | Hypothetical protein. | 0.620 |
SFZ91966.1 | guaA | SAMN05428642_102455 | SAMN05428642_102996 | Small subunit ribosomal protein S1. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.673 |
SFZ91966.1 | infB | SAMN05428642_102455 | SAMN05428642_1011111 | Small subunit ribosomal protein S1. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.698 |
SFZ91966.1 | nusA | SAMN05428642_102455 | SAMN05428642_1011110 | Small subunit ribosomal protein S1. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.914 |
SFZ91966.1 | rpoC | SAMN05428642_102455 | SAMN05428642_102853 | Small subunit ribosomal protein S1. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.989 |
SFZ91966.1 | rpsO | SAMN05428642_102455 | SAMN05428642_103279 | Small subunit ribosomal protein S1. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
SFZ91966.1 | truB | SAMN05428642_102455 | SAMN05428642_101465 | Small subunit ribosomal protein S1. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.822 |
SFZ95183.1 | SFZ91966.1 | SAMN05428642_11010 | SAMN05428642_102455 | Hypothetical protein. | Small subunit ribosomal protein S1. | 0.620 |
SFZ95183.1 | guaA | SAMN05428642_11010 | SAMN05428642_102996 | Hypothetical protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.638 |
SFZ95183.1 | nusA | SAMN05428642_11010 | SAMN05428642_1011110 | Hypothetical protein. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.789 |
SFZ95183.1 | rbfA | SAMN05428642_11010 | SAMN05428642_101821 | Hypothetical protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.789 |
SFZ95183.1 | rpoC | SAMN05428642_11010 | SAMN05428642_102853 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.852 |
SFZ95183.1 | rpsO | SAMN05428642_11010 | SAMN05428642_103279 | Hypothetical protein. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.923 |
SFZ95183.1 | truB | SAMN05428642_11010 | SAMN05428642_101465 | Hypothetical protein. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.868 |
guaA | SFZ91966.1 | SAMN05428642_102996 | SAMN05428642_102455 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Small subunit ribosomal protein S1. | 0.673 |
guaA | SFZ95183.1 | SAMN05428642_102996 | SAMN05428642_11010 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Hypothetical protein. | 0.638 |
guaA | infB | SAMN05428642_102996 | SAMN05428642_1011111 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.638 |
guaA | rpoC | SAMN05428642_102996 | SAMN05428642_102853 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.865 |
guaA | rpsO | SAMN05428642_102996 | SAMN05428642_103279 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.649 |
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