STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ89673.1Protein of unknown function. (176 aa)    
Predicted Functional Partners:
SFZ92680.1
G:T/U-mismatch repair DNA glycosylase.
  
     0.657
rplU
Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.611
SFZ92557.1
sucrose-6F-phosphate phosphohydrolase.
  
     0.599
SFZ94616.1
Hypothetical protein.
  
     0.592
SFZ89676.1
Predicted Zn-dependent peptidase.
       0.569
SFZ94927.1
Hypothetical protein.
  
     0.549
SFZ89170.1
Putative porin.
  
     0.546
SFZ89674.1
Predicted Zn-dependent peptidase.
       0.542
SFZ89805.1
Concanavalin A-like lectin/glucanases superfamily protein.
  
     0.538
SFZ94918.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
  
     0.538
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.