STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ89220.1RNA polymerase sigma-70 factor, ECF subfamily. (171 aa)    
Predicted Functional Partners:
SFZ89222.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
 
   0.902
SFZ89223.1
TonB-dependent Receptor Plug Domain.
 
    0.888
SFZ89196.1
Protein of unknown function.
 
   0.797
SFZ89219.1
Hypothetical protein.
 
 
   0.768
SFZ89195.1
Outer membrane receptor for ferrienterochelin and colicins.
  
    0.696
SFZ89221.1
Protein N-acetyltransferase, RimJ/RimL family.
  
    0.685
SFZ92815.1
Protein of unknown function.
  
   0.631
SFZ92260.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.477
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.475
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.465
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.