STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ90181.1Putative auto-transporter adhesin, head GIN domain. (224 aa)    
Predicted Functional Partners:
SFZ95081.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.686
SFZ93917.1
Hypothetical protein.
  
     0.632
SFZ90180.1
Threonine/homoserine/homoserine lactone efflux protein.
 
     0.623
SFZ92793.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
 
   0.576
SFZ90183.1
Uncharacterized conserved protein YbjQ, UPF0145 family; Belongs to the UPF0145 family.
       0.551
SFZ91960.1
Hypothetical protein.
  
     0.542
SFZ90889.1
CarboxypepD_reg-like domain-containing protein.
  
     0.524
SFZ89909.1
Hypothetical protein.
  
     0.520
SFZ90658.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
    
   0.505
SFZ89750.1
Protein of unknown function.
  
     0.485
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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