STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ92978.1Polysaccharide export outer membrane protein. (268 aa)    
Predicted Functional Partners:
SFZ92976.1
Capsular exopolysaccharide family.
 0.999
SFZ94014.1
Capsular exopolysaccharide family.
 0.999
SFZ92915.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.987
SFZ91685.1
Polysaccharide export outer membrane protein.
  
  
 
0.901
SFZ92973.1
Lipopolysaccharide transport system ATP-binding protein.
 
  
 0.890
SFZ92975.1
Lipopolysaccharide transport system permease protein.
 
  
 0.888
SFZ92919.1
O-Antigen ligase.
 
  
 0.798
SFZ90783.1
Hypothetical protein.
 
     0.773
SFZ89872.1
Hypothetical protein.
  
     0.755
SFZ92923.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.753
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.