STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ92049.1Repeat domain-containing protein. (1093 aa)    
Predicted Functional Partners:
SFZ92759.1
PAP2 superfamily protein.
 
    0.773
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.608
SFZ92763.1
Starch-binding associating with outer membrane.
  
 
   0.569
SFZ92050.1
Carbohydrate binding domain-containing protein.
       0.496
SFZ92758.1
Effector-binding domain-containing protein.
  
     0.473
SFZ92052.1
Starch-binding associating with outer membrane.
       0.464
SFZ91909.1
Amidohydrolase.
  
     0.462
SFZ92054.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.448
SFZ94521.1
NUMOD4 motif-containing protein.
  
     0.409
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.