STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ93646.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (220 aa)    
Predicted Functional Partners:
SFZ90726.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.956
SFZ93645.1
Signal transduction histidine kinase.
  0.956
SFZ94267.1
Hypothetical protein.
  
  0.884
SFZ89432.1
Signal transduction histidine kinase.
  
  0.881
SFZ93271.1
Signal transduction histidine kinase.
 
0.856
SFZ91817.1
Signal transduction histidine kinase.
 
 0.789
SFZ93819.1
Hypothetical protein.
 0.779
SFZ89431.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
  
  0.775
SFZ90579.1
Signal transduction histidine kinase.
 
 0.728
SFZ93789.1
Signal transduction histidine kinase.
 
0.708
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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