SFZ93678.1 protein (Flaviramulus basaltis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFZ93678.1

Regulatory protein, luxR family. (244 aa)

Predicted Functional Partners:

SFZ93271.1

0.847

SFZ90726.1

0.846

SFZ93819.1

0.727

SFZ90579.1

0.683

SFZ91817.1

0.683

SFZ93789.1

0.683

SFZ93416.1

0.669

SFZ94209.1

0.669

SFZ95068.1

0.669

SFZ94965.1

0.631

Your Current Organism:

Flaviramulus basaltis

NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFZ90579.1	SFZ90726.1	SAMN05428642_1011019	SAMN05428642_1011105	Signal transduction histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.842
SFZ90579.1	SFZ91817.1	SAMN05428642_1011019	SAMN05428642_102356	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.896
SFZ90579.1	SFZ93271.1	SAMN05428642_1011019	SAMN05428642_10337	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.984
SFZ90579.1	SFZ93416.1	SAMN05428642_1011019	SAMN05428642_103121	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SFZ90579.1	SFZ93678.1	SAMN05428642_1011019	SAMN05428642_103270	Signal transduction histidine kinase.	Regulatory protein, luxR family.	0.683
SFZ90579.1	SFZ93789.1	SAMN05428642_1011019	SAMN05428642_103335	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.896
SFZ90579.1	SFZ93819.1	SAMN05428642_1011019	SAMN05428642_103353	Signal transduction histidine kinase.	Hypothetical protein.	0.959
SFZ90579.1	SFZ94209.1	SAMN05428642_1011019	SAMN05428642_1042	Signal transduction histidine kinase.	Hypothetical protein.	0.999
SFZ90579.1	SFZ94965.1	SAMN05428642_1011019	SAMN05428642_1064	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.973
SFZ90579.1	SFZ95068.1	SAMN05428642_1011019	SAMN05428642_1072	Signal transduction histidine kinase.	Two component regulator propeller.	0.999
SFZ90726.1	SFZ90579.1	SAMN05428642_1011105	SAMN05428642_1011019	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.842
SFZ90726.1	SFZ91817.1	SAMN05428642_1011105	SAMN05428642_102356	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.842
SFZ90726.1	SFZ93271.1	SAMN05428642_1011105	SAMN05428642_10337	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.855
SFZ90726.1	SFZ93416.1	SAMN05428642_1011105	SAMN05428642_103121	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.878
SFZ90726.1	SFZ93678.1	SAMN05428642_1011105	SAMN05428642_103270	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Regulatory protein, luxR family.	0.846
SFZ90726.1	SFZ93789.1	SAMN05428642_1011105	SAMN05428642_103335	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.842
SFZ90726.1	SFZ93819.1	SAMN05428642_1011105	SAMN05428642_103353	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Hypothetical protein.	0.905
SFZ90726.1	SFZ94209.1	SAMN05428642_1011105	SAMN05428642_1042	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Hypothetical protein.	0.878
SFZ90726.1	SFZ94965.1	SAMN05428642_1011105	SAMN05428642_1064	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	PAS domain S-box-containing protein.	0.853
SFZ90726.1	SFZ95068.1	SAMN05428642_1011105	SAMN05428642_1072	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Two component regulator propeller.	0.878