STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ93904.1Protein of unknown function. (401 aa)    
Predicted Functional Partners:
SFZ93906.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
     0.979
SFZ93905.1
Hypothetical protein.
 
     0.956
SFZ93902.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
    0.919
SFZ93907.1
Uncharacterized membrane protein YckC, RDD family.
 
     0.915
SFZ93903.1
MoxR-like ATPase.
  
    0.798
SFZ93908.1
Uncharacterized membrane protein YeiH.
       0.607
SFZ90616.1
Uncharacterized membrane protein YckC, RDD family.
 
     0.527
SFZ93018.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.524
SFZ89393.1
HD domain-containing protein.
  
     0.512
SFZ90922.1
Gluconate 2-dehydrogenase subunit 3.
  
     0.439
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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