STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ93349.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (399 aa)    
Predicted Functional Partners:
SFZ94333.1
Helix-turn-helix domain-containing protein.
  
     0.752
SFZ89519.1
Helix-turn-helix domain-containing protein.
  
     0.751
SFZ89518.1
Hypothetical protein.
  
     0.601
SFZ94334.1
RteC protein.
  
     0.527
SFZ89520.1
RteC protein.
  
     0.525
SFZ94332.1
Hypothetical protein.
  
     0.514
SFZ94326.1
Hypothetical protein.
  
     0.426
SFZ92763.1
Starch-binding associating with outer membrane.
  
     0.415
SFZ94328.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.