SFZ94920.1 protein (Flaviramulus basaltis) - STRING interaction network

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Score

SFZ94920.1

ATP-binding cassette, subfamily F, member 3. (636 aa)

Predicted Functional Partners:

rplO

0.811

rplU

0.796

rpsC

0.793

rpsO

0.793

rplT

0.792

rplM

0.791

rplC

0.791

rpmH

0.788

rplR

0.787

rpmF

0.787

Your Current Organism:

Flaviramulus basaltis

NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFZ94920.1	rplC	SAMN05428642_105174	SAMN05428642_10199	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.791
SFZ94920.1	rplM	SAMN05428642_105174	SAMN05428642_1011088	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.791
SFZ94920.1	rplO	SAMN05428642_105174	SAMN05428642_10180	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.811
SFZ94920.1	rplR	SAMN05428642_105174	SAMN05428642_10183	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.787
SFZ94920.1	rplT	SAMN05428642_105174	SAMN05428642_10720	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.792
SFZ94920.1	rplU	SAMN05428642_105174	SAMN05428642_101494	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.796
SFZ94920.1	rpmF	SAMN05428642_105174	SAMN05428642_101841	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.787
SFZ94920.1	rpmH	SAMN05428642_105174	SAMN05428642_102763	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.788
SFZ94920.1	rpsC	SAMN05428642_105174	SAMN05428642_10193	ATP-binding cassette, subfamily F, member 3.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.793
SFZ94920.1	rpsO	SAMN05428642_105174	SAMN05428642_103279	ATP-binding cassette, subfamily F, member 3.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.793
rplC	SFZ94920.1	SAMN05428642_10199	SAMN05428642_105174	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATP-binding cassette, subfamily F, member 3.	0.791
rplC	rplM	SAMN05428642_10199	SAMN05428642_1011088	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplO	SAMN05428642_10199	SAMN05428642_10180	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplR	SAMN05428642_10199	SAMN05428642_10183	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplT	SAMN05428642_10199	SAMN05428642_10720	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplC	rplU	SAMN05428642_10199	SAMN05428642_101494	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rpmF	SAMN05428642_10199	SAMN05428642_101841	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rplC	rpmH	SAMN05428642_10199	SAMN05428642_102763	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.999
rplC	rpsC	SAMN05428642_10199	SAMN05428642_10193	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	SAMN05428642_10199	SAMN05428642_103279	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999