SFZ94794.1 protein (Flaviramulus basaltis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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[Homology]

Score

SFZ94794.1

Phosphate-selective porin O and P. (386 aa)

Predicted Functional Partners:

SFZ94793.1

0.812

SFZ94795.1

0.715

SFZ94792.1

0.515

SFZ94796.1

0.432

SFZ94797.1

0.409

Your Current Organism:

Flaviramulus basaltis

NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFZ94792.1	SFZ94793.1	SAMN05428642_10582	SAMN05428642_10583	AraC-type DNA-binding protein.	Cytochrome C oxidase, cbb3-type, subunit III.	0.566
SFZ94792.1	SFZ94794.1	SAMN05428642_10582	SAMN05428642_10584	AraC-type DNA-binding protein.	Phosphate-selective porin O and P.	0.515
SFZ94792.1	SFZ94795.1	SAMN05428642_10582	SAMN05428642_10585	AraC-type DNA-binding protein.	Hypothetical protein.	0.472
SFZ94792.1	SFZ94796.1	SAMN05428642_10582	SAMN05428642_10586	AraC-type DNA-binding protein.	WG containing repeat-containing protein.	0.542
SFZ94793.1	SFZ94792.1	SAMN05428642_10583	SAMN05428642_10582	Cytochrome C oxidase, cbb3-type, subunit III.	AraC-type DNA-binding protein.	0.566
SFZ94793.1	SFZ94794.1	SAMN05428642_10583	SAMN05428642_10584	Cytochrome C oxidase, cbb3-type, subunit III.	Phosphate-selective porin O and P.	0.812
SFZ94793.1	SFZ94795.1	SAMN05428642_10583	SAMN05428642_10585	Cytochrome C oxidase, cbb3-type, subunit III.	Hypothetical protein.	0.700
SFZ94793.1	SFZ94796.1	SAMN05428642_10583	SAMN05428642_10586	Cytochrome C oxidase, cbb3-type, subunit III.	WG containing repeat-containing protein.	0.438
SFZ94794.1	SFZ94792.1	SAMN05428642_10584	SAMN05428642_10582	Phosphate-selective porin O and P.	AraC-type DNA-binding protein.	0.515
SFZ94794.1	SFZ94793.1	SAMN05428642_10584	SAMN05428642_10583	Phosphate-selective porin O and P.	Cytochrome C oxidase, cbb3-type, subunit III.	0.812
SFZ94794.1	SFZ94795.1	SAMN05428642_10584	SAMN05428642_10585	Phosphate-selective porin O and P.	Hypothetical protein.	0.715
SFZ94794.1	SFZ94796.1	SAMN05428642_10584	SAMN05428642_10586	Phosphate-selective porin O and P.	WG containing repeat-containing protein.	0.432
SFZ94794.1	SFZ94797.1	SAMN05428642_10584	SAMN05428642_10587	Phosphate-selective porin O and P.	Hypothetical protein.	0.409
SFZ94795.1	SFZ94792.1	SAMN05428642_10585	SAMN05428642_10582	Hypothetical protein.	AraC-type DNA-binding protein.	0.472
SFZ94795.1	SFZ94793.1	SAMN05428642_10585	SAMN05428642_10583	Hypothetical protein.	Cytochrome C oxidase, cbb3-type, subunit III.	0.700
SFZ94795.1	SFZ94794.1	SAMN05428642_10585	SAMN05428642_10584	Hypothetical protein.	Phosphate-selective porin O and P.	0.715
SFZ94795.1	SFZ94796.1	SAMN05428642_10585	SAMN05428642_10586	Hypothetical protein.	WG containing repeat-containing protein.	0.470
SFZ94795.1	SFZ94797.1	SAMN05428642_10585	SAMN05428642_10587	Hypothetical protein.	Hypothetical protein.	0.444
SFZ94796.1	SFZ94792.1	SAMN05428642_10586	SAMN05428642_10582	WG containing repeat-containing protein.	AraC-type DNA-binding protein.	0.542
SFZ94796.1	SFZ94793.1	SAMN05428642_10586	SAMN05428642_10583	WG containing repeat-containing protein.	Cytochrome C oxidase, cbb3-type, subunit III.	0.438

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

23

average node degree:

4.18

avg. local clustering coefficient:

0.59

expected number of edges:

43

PPI enrichment p-value:

1

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 127

1.65

3.65

2.73e-13

GO:0019538

Protein metabolic process

11 of 541

1.06

1.43

3.98e-10

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 56

2.01

5.92

7.28e-17

GO:0019843

rRNA binding

8 of 42

2.03

5.03

3.98e-13

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 64

1.95

5.69

4.48e-17

GO:0015934

Large ribosomal subunit

3 of 8

2.33

2.49

1.59e-05

GO:0005622

Intracellular anatomical structure

11 of 1866

0.52

0.46

3.57e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1952

Structural constituent of ribosome

10 of 43

2.12

6.65

1.18e-17

CL:1956

Structural constituent of ribosome

9 of 37

2.14

6.31

3.46e-16

CL:1957

Structural constituent of ribosome

8 of 27

2.23

6.18

7.50e-15

CL:1959

Structural constituent of ribosome

6 of 22

2.19

4.54

1.51e-10

CL:1989

Mixed, incl. Translation protein SH3-like domain superfamily, and Ribosomal large subunit assembly

3 of 7

2.39

2.35

3.36e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

10 of 63

1.95

5.74

3.79e-17

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 44

1.96

4.03

1.65e-10

GOCC:0015934

Large ribosomal subunit

4 of 7

2.51

3.58

1.40e-07

GOCC:0022625

Cytosolic large ribosomal subunit

2 of 4

2.45

1.54

0.0014

GOCC:0043229

Intracellular organelle

10 of 565

1.0

1.2

6.64e-08

GOCC:0005622

Intracellular

11 of 2147

0.46

0.4

0.00030

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

10 of 65

1.94

5.6

7.79e-17

KW-0699

rRNA-binding

8 of 42

2.03

5.2

1.08e-13

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