Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABP52701.1PFAM: extracellular solute-binding protein, family 5. (553 aa)    
Predicted Functional Partners:
ABP52702.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.965
ABP52703.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.960
ABP54134.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.872
ABP52704.1
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.856
ABP52705.1
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.854
ABP54135.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.830
ABP55095.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.791
ABP55096.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.789
ABP56228.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.772
ABP56253.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.771
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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