STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP52756.1PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin. (807 aa)    
Predicted Functional Partners:
ABP55477.1
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.656
ABP52757.1
PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
    0.593
ABP52755.1
PFAM: GCN5-related N-acetyltransferase.
       0.558
ABP56986.1
Hypothetical protein.
  
     0.493
ABP56099.1
Hypothetical protein.
  
   0.464
ABP56652.1
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
     0.453
ABP56858.1
TIGRFAM: polymorphic outer membrane protein.
  
    0.440
ABP54957.1
PFAM: Polymorphic membrane protein, Chlamydia.
  
    0.434
ABP53699.1
Hypothetical protein.
  
   0.431
ABP52845.1
PFAM: Endonuclease/exonuclease/phosphatase.
  
     0.428
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.