STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP52767.1PFAM: protein of unknown function DUF47. (282 aa)    
Predicted Functional Partners:
ABP52768.1
PFAM: phosphate transporter.
 
  
 0.994
ABP52770.1
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
    
 0.629
ABP52769.1
PFAM: NUDIX hydrolase.
       0.608
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.510
ABP54323.1
SMART: guanylate kinase/L-type calcium channel region.
   
    0.499
ABP52766.1
PFAM: protein of unknown function DUF402.
       0.453
rpmB
PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.452
rpmB-2
PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.452
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.