Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABP52781.1PFAM: Rhodanese domain protein. (301 aa)    
Predicted Functional Partners:
ABP52782.1
PFAM: protein of unknown function DUF1416.
 
  
 0.942
ABP56135.1
PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.931
ABP53926.1
PFAM: Rhodanese domain protein.
  
  
0.926
ABP53737.1
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase.
 
 
 0.921
ABP53683.1
PFAM: aminotransferase, class V.
  
 0.920
ABP55735.1
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase.
  
 0.920
ABP56134.1
Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
    
 0.913
ABP55030.1
PFAM: aminotransferase, class I and II.
     
 0.902
ABP55214.1
PFAM: aminotransferase, class I and II.
     
 0.902
ABP54553.1
PFAM: DoxX family protein.
     
  0.900
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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