STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP52827.1PFAM: Proline dehydrogenase. (305 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.957
ABP53454.1
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.943
ABP53304.1
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.924
ABP54105.1
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.924
ABP55959.1
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.924
ABP54220.1
PFAM: aldehyde dehydrogenase.
 
 
 0.922
ABP53436.1
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.921
ABP56050.1
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.918
ABP55281.1
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.916
ABP55430.1
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase.
 
 
 0.911
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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