STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP52848.1TIGRFAM: putative regulatory protein, FmdB family. (70 aa)    
Predicted Functional Partners:
ABP52542.1
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
     0.598
ABP52847.1
Membrane-bound lytic murein transglycosylase B-like protein.
       0.559
ABP54648.1
PFAM: cyclase/dehydrase.
  
     0.540
ABP52849.1
Adenylate cyclase family 3-like protein.
       0.476
ABP53650.1
Hypothetical protein.
  
     0.453
ABP55210.1
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR.
 
     0.447
ABP52846.1
PFAM: GCN5-related N-acetyltransferase.
       0.425
ABP54360.1
Hypothetical protein.
  
     0.415
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.