STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP52964.1PFAM: protein of unknown function DUF909; Belongs to the WXG100 family. (95 aa)    
Predicted Functional Partners:
ABP52963.1
Hypothetical protein; Belongs to the WXG100 family.
  
 
 0.996
ABP53904.1
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
 
 
 
 0.724
ABP52962.1
PFAM: protein of unknown function DUF690.
 
 
 0.723
ABP52959.1
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
 
 
 
 0.698
ABP56408.1
PFAM: heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
      
 0.628
ABP53906.1
PFAM: protein of unknown function DUF690.
 
 
 0.618
ABP54603.1
PFAM: cell divisionFtsK/SpoIIIE.
 
 
 
 0.613
ABP53860.1
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
   
 
 0.610
ABP53905.1
Hypothetical protein.
 
   
 0.573
ABP56733.1
PFAM: cell divisionFtsK/SpoIIIE.
 
 
 
 0.546
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.