Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABP53283.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
ABP53281.1
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.597
ABP53282.1
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.597
ABP52846.1
PFAM: GCN5-related N-acetyltransferase.
  
     0.594
ABP56262.1
PFAM: NUDIX hydrolase.
 
     0.522
ABP53287.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.491
ABP56728.1
Hypothetical protein.
  
     0.476
ABP56261.1
PFAM: NUDIX hydrolase.
 
     0.447
ABP53284.1
PFAM: basic membrane lipoprotein.
       0.441
ABP53285.1
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.427
ABP53286.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.425
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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