Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABP53425.1Hypothetical protein. (149 aa)    
Predicted Functional Partners:
ABP53426.1
Hypothetical protein.
 
     0.749
ABP55802.1
Hypothetical protein.
  
     0.700
ABP53783.1
Hypothetical protein.
  
     0.639
ABP52495.1
Hypothetical protein.
  
     0.593
ABP53685.1
PFAM: Methionine synthase, vitamin-B12 independent.
  
     0.569
ABP55530.1
Hypothetical protein.
  
     0.555
ABP52906.1
Hypothetical protein.
  
     0.549
ABP52899.1
Hypothetical protein.
  
     0.478
ABP55898.1
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta.
  
     0.471
ABP53820.1
PFAM: GCN5-related N-acetyltransferase.
  
     0.457
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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