Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABP53487.1Methyltransferase type 11; PFAM: regulatory protein, MerR; Methyltransferase type 11; Methyltransferase type 12. (429 aa)    
Predicted Functional Partners:
ABP54931.1
PFAM: protein of unknown function DUF407.
  
     0.526
ABP56533.1
PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.
   
 
 0.510
ABP54866.1
PFAM: regulatory protein, MerR.
  
     0.478
ABP56895.1
SMART: helix-turn-helix- domain containing protein, AraC type.
  
     0.468
ABP55513.1
PFAM: Lysine exporter protein (LYSE/YGGA).
 
     0.454
ABP54655.1
PFAM: glutamine synthetase, catalytic region.
 
 
 0.426
ABP55273.1
PFAM: condensation domain protein.
   
 
 0.423
ABP55601.1
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase.
     
 0.405
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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