STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP53878.1PFAM: SpoOM family protein. (312 aa)    
Predicted Functional Partners:
ABP53876.1
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region.
       0.697
ABP53877.1
PFAM: CBS domain containing protein; protein of unknown function DUF21.
       0.697
ABP56030.1
PFAM: ATP-binding region, ATPase domain protein domain protein; Nitrate and nitrite sensing domain protein.
  
     0.519
ABP53875.1
Aminopeptidase Y; PFAM: peptidase M20; peptidase M28.
 
     0.516
ABP56232.1
Hypothetical protein.
  
     0.502
ABP56028.1
PFAM: protein of unknown function DUF742.
  
     0.494
ABP55777.1
TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent.
  
     0.493
ABP55892.1
Hypothetical protein.
  
     0.487
ABP52788.1
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein.
  
     0.473
ABP53714.1
PFAM: Endonuclease/exonuclease/phosphatase.
  
     0.465
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.