STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP53897.1PFAM: ABC transporter related; SMART: AAA ATPase. (248 aa)    
Predicted Functional Partners:
ABP53894.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 0.999
ABP53895.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 0.999
ABP53896.1
PFAM: extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.997
ABP56728.1
Hypothetical protein.
  
 
 0.946
ABP53320.1
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
     
0.899
ABP53990.1
PFAM: ABC transporter related.
 
     
0.899
ABP55614.1
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
     
0.899
ABP56873.1
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
     
0.899
ABP54990.1
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.896
ABP54135.1
PFAM: binding-protein-dependent transport systems inner membrane component.
    
 0.878
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.