STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP53916.1Hypothetical protein. (539 aa)    
Predicted Functional Partners:
hflX
GTP-binding protein, HSR1-related; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.784
ABP53935.1
Hypothetical protein.
  
     0.598
ABP52834.1
Hypothetical protein.
  
 
 
 0.576
ABP52524.1
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; proteinase inhibitor I9, subtilisin propeptide.
 
 
 0.564
ABP53914.1
Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic enzyme domain protein; malic enzyme, NAD-binding.
  
    0.527
ABP55415.1
PFAM: membrane-bound metal-dependent hydrolase.
  
   
 0.523
ABP52950.1
Hypothetical protein.
  
 
 
 0.521
ABP55949.1
Hypothetical protein.
  
     0.519
ABP56796.1
Hypothetical protein.
  
     0.485
ABP56257.1
PFAM: PspC domain protein.
  
     0.484
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.