STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP54150.1PFAM: ABC-2 type transporter. (298 aa)    
Predicted Functional Partners:
ABP54149.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.999
ABP52917.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.992
ABP52919.1
PFAM: glycosyl transferase, family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
  
 0.830
ABP54103.1
PFAM: glycosyl transferase, family 2.
  
  
 0.821
ABP54147.1
Hypothetical protein.
  
  
 0.749
ispD
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
     
 0.714
ABP54102.1
PFAM: UDP-galactopyranose mutase.
  
  
 0.677
ABP53050.1
Hypothetical protein.
  
  
 0.665
ABP53051.1
Hypothetical protein.
  
  
 0.665
ABP54532.1
PFAM: glycosyl transferase, family 2.
 
  
 0.608
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.