STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP54455.1Alpha-amylase; PFAM: glycoside hydrolase, starch-binding; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain. (589 aa)    
Predicted Functional Partners:
ABP55498.1
TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
  
 0.958
ABP53278.1
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
  
 0.928
ABP55130.1
PFAM: glycoside hydrolase, starch-binding; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain.
  
  
 
0.910
ABP55692.1
Chitinase glycosyl gydrolase family 18; PFAM: glycoside hydrolase, family 18; cellulose-binding, family II; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.633
ABP52722.1
PFAM: amino acid permease-associated region; Amino acid transporter, transmembrane.
   
 0.557
ABP53953.1
Hypothetical protein.
   
 0.557
ABP54210.1
PFAM: amino acid permease-associated region.
   
 0.557
ABP56803.1
PFAM: amino acid permease-associated region.
   
 0.557
ABP55601.1
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase.
     
 0.547
ABP56833.1
Chitinase; PFAM: glycoside hydrolase, family 19; Carbohydrate-binding family V/XII.
  
   
 0.477
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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