Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABP54471.1PFAM: VWA containing CoxE family protein. (447 aa)    
Predicted Functional Partners:
ABP54472.1
PFAM: ATPase associated with various cellular activities, AAA_5.
 
  
 0.945
ABP54473.1
Hypothetical protein.
 
     0.945
ABP54469.1
Hypothetical protein.
       0.834
ABP54470.1
Hypothetical protein.
       0.834
ABP55322.1
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
  
 0.789
ABP54972.1
Protoporphyrin IX magnesium-chelatase; PFAM: von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
  
 
 0.760
ABP55321.1
Hypothetical protein.
     0.638
ABP52962.1
PFAM: protein of unknown function DUF690.
  
     0.480
ABP52968.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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