Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABP54584.1PFAM: glycosyl transferase, family 2; GtrA family protein. (410 aa)    
Predicted Functional Partners:
ABP54583.1
PFAM: glycosyl transferase, family 39.
  
 0.986
ABP54582.1
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.
 
 
 
 0.817
ABP54586.1
PFAM: sulfatase.
  
  
 0.789
ABP56920.1
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase.
 
  
 0.757
ABP55324.1
PFAM: acyltransferase 3.
  
 
 0.715
ABP55879.1
PFAM: acyltransferase 3.
  
 
 0.715
ABP54581.1
PFAM: response regulator receiver; transcriptional regulator domain protein.
 
   
 0.709
ABP56845.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.666
ABP54585.1
Hypothetical protein.
       0.651
ABP54223.1
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: glycosyl transferase, family 9; Haloacid dehalogenase domain protein hydrolase.
  
 
 0.647
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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