ABP54602.1 protein (Salinispora tropica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABP54602.1

PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein. (496 aa)

Predicted Functional Partners:

rplP

0.856

ABP54601.1

0.560

ABP54213.1

0.552

ABP56888.1

0.425

ABP56048.1

0.416

ABP56884.1

0.410

ABP56631.1

0.409

ABP56633.1

0.402

Your Current Organism:

Salinispora tropica

NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABP54213.1	ABP54602.1	Strop_1750	Strop_2151	Hypothetical protein.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.552
ABP54601.1	ABP54602.1	Strop_2150	Strop_2151	Hypothetical protein.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.560
ABP54602.1	ABP54213.1	Strop_2151	Strop_1750	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	Hypothetical protein.	0.552
ABP54602.1	ABP54601.1	Strop_2151	Strop_2150	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	Hypothetical protein.	0.560
ABP54602.1	ABP56048.1	Strop_2151	Strop_3617	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	Hypothetical protein.	0.416
ABP54602.1	ABP56631.1	Strop_2151	Strop_4203	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	Hypothetical protein.	0.409
ABP54602.1	ABP56633.1	Strop_2151	Strop_4205	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	Hypothetical protein.	0.402
ABP54602.1	ABP56884.1	Strop_2151	Strop_4456	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	PFAM: type II secretion system protein.	0.410
ABP54602.1	ABP56888.1	Strop_2151	Strop_4460	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	Hypothetical protein.	0.425
ABP54602.1	rplP	Strop_2151	Strop_3916	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.856
ABP56048.1	ABP54602.1	Strop_3617	Strop_2151	Hypothetical protein.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.416
ABP56631.1	ABP54602.1	Strop_4203	Strop_2151	Hypothetical protein.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.409
ABP56631.1	ABP56633.1	Strop_4203	Strop_4205	Hypothetical protein.	Hypothetical protein.	0.910
ABP56633.1	ABP54602.1	Strop_4205	Strop_2151	Hypothetical protein.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.402
ABP56633.1	ABP56631.1	Strop_4205	Strop_4203	Hypothetical protein.	Hypothetical protein.	0.910
ABP56884.1	ABP54602.1	Strop_4456	Strop_2151	PFAM: type II secretion system protein.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.410
ABP56884.1	ABP56888.1	Strop_4456	Strop_4460	PFAM: type II secretion system protein.	Hypothetical protein.	0.957
ABP56888.1	ABP54602.1	Strop_4460	Strop_2151	Hypothetical protein.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.425
ABP56888.1	ABP56884.1	Strop_4460	Strop_4456	Hypothetical protein.	PFAM: type II secretion system protein.	0.957
rplP	ABP54602.1	Strop_3916	Strop_2151	LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein.	0.856

Network Stats

number of nodes:

11

number of edges:

47

average node degree:

8.55

avg. local clustering coefficient:

0.968

expected number of edges:

13

PPI enrichment p-value:

3.6e-13

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042128

Nitrate assimilation

2 of 8

2.7

0.99

0.0337

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0050464

Nitrate reductase (NADPH) activity

2 of 2

3.3

1.83

0.0020

GO:0043546

Molybdopterin cofactor binding

2 of 4

3.0

1.82

0.0020

GO:0030151

Molybdenum ion binding

2 of 8

2.7

1.74

0.0025

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:15725

Nitrate metabolic process

2 of 7

2.76

1.21

0.0158

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF03404

Mo-co oxidoreductase dimerisation domain

2 of 4

3.0

1.68

0.0033

PF00174

Oxidoreductase molybdopterin binding domain

2 of 4

3.0

1.68

0.0033

PF00970

Oxidoreductase FAD-binding domain

2 of 8

2.7

1.66

0.0033

PF00175

Oxidoreductase NAD-binding domain

2 of 16

2.4

1.36

0.0085

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036400

Cytochrome b5-like heme/steroid binding domain superfamily

3 of 28

2.33

1.95

0.00091

IPR001199

Cytochrome b5-like heme/steroid binding domain

3 of 28

2.33

1.95

0.00091

IPR036374

Oxidoreductase, molybdopterin-binding domain superfamily

2 of 4

3.0

1.69

0.0031

IPR008335

Eukaryotic molybdopterin oxidoreductase

2 of 4

3.0

1.69

0.0031

IPR005066

Moybdenum cofactor oxidoreductase, dimerisation

2 of 4

3.0

1.69

0.0031

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01117

Cytochrome b5-like Heme/Steroid binding domain

3 of 29

2.32

2.47

0.00012

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Fusion

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About