STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP54841.1PFAM: Alkaline phosphatase. (540 aa)    
Predicted Functional Partners:
folE
PFAM: GTP cyclohydrolase I.
    
 0.943
ABP56724.1
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.941
ABP55919.1
PFAM: Alkaline phosphatase.
  
  
 
0.928
ABP53242.1
PFAM: Alkaline phosphatase.
  
  
 
0.901
ABP55229.1
PFAM: class II aldolase/adducin family protein.
      0.649
ABP54840.1
PFAM: major facilitator superfamily MFS_1.
       0.532
ABP54839.1
Hypothetical protein.
       0.456
ABP55923.1
TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; Belongs to the folylpolyglutamate synthase family.
      
 0.438
ABP56725.1
TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS.
      
 0.414
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.