STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP54943.1PFAM: AMP-dependent synthetase and ligase. (466 aa)    
Predicted Functional Partners:
ABP54938.1
PFAM: AMP-dependent synthetase and ligase.
  
   
 0.912
ABP55273.1
PFAM: condensation domain protein.
  
 0.886
ABP53164.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase.
  
   
 0.813
ABP53497.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding.
 
 
 0.796
ABP54928.1
PFAM: AMP-dependent synthetase and ligase.
  
     0.774
ABP54935.1
PFAM: Phytanoyl-CoA dioxygenase.
 
  
 0.763
ABP55228.1
PFAM: AMP-dependent synthetase and ligase.
  
     0.749
ABP54940.1
PFAM: beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.748
ABP56845.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.744
ABP53157.1
PFAM: AMP-dependent synthetase and ligase.
  
     0.731
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.