ABP55077.1 protein (Salinispora tropica) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Score

ABP55077.1

PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR. (252 aa)

Predicted Functional Partners:

ABP54843.1

0.729

ABP55078.1

0.728

ABP55050.1

0.719

ABP56611.1

0.708

ABP55049.1

0.690

ABP55273.1

0.677

ABP52609.1

0.672

ABP55134.1

0.659

ABP55066.1

0.627

ABP54641.1

0.593

Your Current Organism:

Salinispora tropica

NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABP52609.1	ABP55077.1	Strop_0124	Strop_2633	PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.	0.672
ABP52609.1	ABP55273.1	Strop_0124	Strop_2832	PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	PFAM: condensation domain protein.	0.721
ABP54641.1	ABP55077.1	Strop_2190	Strop_2633	PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.	0.593
ABP54641.1	ABP55273.1	Strop_2190	Strop_2832	PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	PFAM: condensation domain protein.	0.677
ABP54843.1	ABP55077.1	Strop_2396	Strop_2633	PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.	0.729
ABP54843.1	ABP55273.1	Strop_2396	Strop_2832	PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	PFAM: condensation domain protein.	0.721
ABP55049.1	ABP55050.1	Strop_2605	Strop_2606	PFAM: coenzyme A transferase.	PFAM: coenzyme A transferase.	0.999
ABP55049.1	ABP55066.1	Strop_2605	Strop_2622	PFAM: coenzyme A transferase.	Hypothetical protein.	0.774
ABP55049.1	ABP55077.1	Strop_2605	Strop_2633	PFAM: coenzyme A transferase.	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.	0.690
ABP55049.1	ABP55078.1	Strop_2605	Strop_2634	PFAM: coenzyme A transferase.	PFAM: luciferase family protein.	0.681
ABP55050.1	ABP55049.1	Strop_2606	Strop_2605	PFAM: coenzyme A transferase.	PFAM: coenzyme A transferase.	0.999
ABP55050.1	ABP55066.1	Strop_2606	Strop_2622	PFAM: coenzyme A transferase.	Hypothetical protein.	0.781
ABP55050.1	ABP55077.1	Strop_2606	Strop_2633	PFAM: coenzyme A transferase.	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.	0.719
ABP55050.1	ABP55078.1	Strop_2606	Strop_2634	PFAM: coenzyme A transferase.	PFAM: luciferase family protein.	0.713
ABP55066.1	ABP55049.1	Strop_2622	Strop_2605	Hypothetical protein.	PFAM: coenzyme A transferase.	0.774
ABP55066.1	ABP55050.1	Strop_2622	Strop_2606	Hypothetical protein.	PFAM: coenzyme A transferase.	0.781
ABP55066.1	ABP55077.1	Strop_2622	Strop_2633	Hypothetical protein.	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.	0.627
ABP55066.1	ABP55078.1	Strop_2622	Strop_2634	Hypothetical protein.	PFAM: luciferase family protein.	0.751
ABP55066.1	ABP55273.1	Strop_2622	Strop_2832	Hypothetical protein.	PFAM: condensation domain protein.	0.453
ABP55077.1	ABP52609.1	Strop_2633	Strop_0124	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.	PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.672

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Network Stats

number of nodes:

11

number of edges:

30

average node degree:

5.45

avg. local clustering coefficient:

0.834

expected number of edges:

12

PPI enrichment p-value:

1.83e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 105

1.32

2.26

5.58e-12

GO:0043933

Protein-containing complex organization

3 of 14

1.63

1.2

0.0027

GO:0006415

Translational termination

2 of 6

1.82

0.84

0.0239

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

9 of 53

1.53

2.79

1.78e-10

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 55

1.51

2.82

4.37e-11

GO:0005622

Intracellular anatomical structure

11 of 918

0.37

0.32

0.0012

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:144

Ribosome

7 of 16

1.94

4.08

7.50e-11

CL:146

Ribosome

5 of 11

1.95

3.06

1.37e-07

CL:76

Ribosome, and Regulation of translation

11 of 78

1.45

2.86

1.35e-13

CL:88

Structural constituent of ribosome

8 of 49

1.51

2.64

7.59e-10

CL:79

Ribosome, and Elongation factor

9 of 69

1.41

2.45

1.25e-10

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

lali03010

Ribosome

9 of 51

1.54

2.97

2.41e-11

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

5 of 43

1.36

1.29

0.00037

GOCC:0043232

Intracellular non-membrane-bounded organelle

6 of 114

1.02

0.91

0.00048

GOCC:0043229

Intracellular organelle

8 of 227

0.84

0.73

0.00037

GOCC:0005622

Intracellular

11 of 901

0.38

0.32

0.0023

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 53

1.53

2.86

5.55e-11

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