ABP55097.1 protein (Salinispora tropica) - STRING interaction network

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

ABP55097.1

PFAM: extracellular solute-binding protein, family 5. (517 aa)

Predicted Functional Partners:

ABP55095.1

0.971

ABP55096.1

0.965

ABP55094.1

0.921

ABP55091.1

0.841

ABP54135.1

0.838

ABP52703.1

0.822

ABP55092.1

0.820

ABP54134.1

0.816

ABP55093.1

0.810

ABP56765.1

0.792

Your Current Organism:

Salinispora tropica

NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABP52703.1	ABP54134.1	Strop_0218	Strop_1670	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.914
ABP52703.1	ABP55094.1	Strop_0218	Strop_2650	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase.	0.774
ABP52703.1	ABP55096.1	Strop_0218	Strop_2652	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.879
ABP52703.1	ABP55097.1	Strop_0218	Strop_2653	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein, family 5.	0.822
ABP52703.1	ABP56765.1	Strop_0218	Strop_4337	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.904
ABP54134.1	ABP52703.1	Strop_1670	Strop_0218	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.914
ABP54134.1	ABP54135.1	Strop_1670	Strop_1671	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.992
ABP54134.1	ABP55094.1	Strop_1670	Strop_2650	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase.	0.621
ABP54134.1	ABP55095.1	Strop_1670	Strop_2651	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.879
ABP54134.1	ABP55097.1	Strop_1670	Strop_2653	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein, family 5.	0.816
ABP54135.1	ABP54134.1	Strop_1671	Strop_1670	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.992
ABP54135.1	ABP55094.1	Strop_1671	Strop_2650	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase.	0.890
ABP54135.1	ABP55096.1	Strop_1671	Strop_2652	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.885
ABP54135.1	ABP55097.1	Strop_1671	Strop_2653	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein, family 5.	0.838
ABP54135.1	ABP56765.1	Strop_1671	Strop_4337	PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.930
ABP55091.1	ABP55092.1	Strop_2647	Strop_2648	PFAM: condensation domain protein; phosphopantetheine-binding.	PFAM: Methyltransferase type 11; Methyltransferase type 12.	0.984
ABP55091.1	ABP55093.1	Strop_2647	Strop_2649	PFAM: condensation domain protein; phosphopantetheine-binding.	PFAM: Methyltransferase type 12.	0.961
ABP55091.1	ABP55094.1	Strop_2647	Strop_2650	PFAM: condensation domain protein; phosphopantetheine-binding.	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase.	0.800
ABP55091.1	ABP55095.1	Strop_2647	Strop_2651	PFAM: condensation domain protein; phosphopantetheine-binding.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.774
ABP55091.1	ABP55096.1	Strop_2647	Strop_2652	PFAM: condensation domain protein; phosphopantetheine-binding.	PFAM: binding-protein-dependent transport systems inner membrane component.	0.737

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Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

13

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0097588

Archaeal or bacterial-type flagellum-dependent cell motility

9 of 30

2.11

5.84

5.20e-15

GO:0071973

Bacterial-type flagellum-dependent cell motility

8 of 25

2.14

5.49

1.34e-13

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003774

Cytoskeletal motor activity

5 of 6

2.55

4.18

8.88e-09

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009288

Bacterial-type flagellum

10 of 27

2.2

7.45

3.88e-19

GO:0009425

Bacterial-type flagellum basal body

9 of 20

2.29

7.38

8.75e-18

GO:0030694

Bacterial-type flagellum basal body, rod

5 of 8

2.43

4.58

7.75e-10

GO:0009426

Bacterial-type flagellum basal body, distal rod

3 of 3

2.63

2.89

4.14e-06

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:35056531

(2021) Brucella and Its Hidden Flagellar System.

6 of 14

2.26

4.53

3.27e-10

PMID:34946191

(2021) Gene Analysis of Listeria monocytogenes Suspended Aggregates Induced by Ralstonia insidiosa Cell-Free Supernatants under Nutrient-Poor Environments.

4 of 9

2.28

2.94

1.61e-06

PMID:34867860

(2021) The FtcR-Like Protein ActR in Azorhizobium caulinodans ORS571 Is Involved in Bacterial Motility and Symbiosis With the Host Plant.

3 of 14

1.96

1.61

0.00060

PMID:31001223

(2019) Identification of Cbp1, a c-di-GMP Binding Chemoreceptor in Azorhizobium caulinodans ORS571 Involved in Chemotaxis and Nodulation of the Host Plant.

2 of 6

2.16

1.07

0.0098

PMID:22174640

(2011) Environmental signals and regulatory pathways that influence exopolysaccharide production in rhizobia.

2 of 11

1.89

0.87

0.0217

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4226

Cytoskeletal motor activity, and Bacterial-type flagellum basal body, rod

10 of 12

2.55

9.73

1.72e-21

CL:4224

Flagellar assembly

11 of 19

2.39

9.53

9.29e-23

CL:4228

Bacterial-type flagellum basal body, rod

6 of 6

2.63

5.89

3.39e-12

CL:4240

Cytoskeletal motor activity

4 of 5

2.54

3.49

2.21e-07

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

azc02040

Flagellar assembly

11 of 29

2.21

8.34

4.25e-22

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009288

Bacterial-type flagellum

10 of 32

2.13

6.83

3.45e-18

GOCC:0009425

Bacterial-type flagellum basal body

8 of 22

2.19

5.96

1.69e-14

GOCC:0009426

Bacterial-type flagellum basal body, distal rod

2 of 2

2.63

1.53

0.0016

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0282

Flagellum

9 of 26

2.17

6.47

2.69e-16

KW-0975

Bacterial flagellum

6 of 15

2.23

4.7

9.03e-11

KW-0574

Periplasm

2 of 8

2.03

1.05

0.0099

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00460

Flagella basal body rod protein

3 of 5

2.41

1.85

0.00034

PF06429

Flagellar basal body rod FlgEFG protein C-terminal

3 of 6

2.33

1.84

0.00034

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001444

Flagellar basal body rod protein, N-terminal

3 of 5

2.41

1.64

0.00090

IPR010930

Flagellar basal-body/hook protein, C-terminal domain

3 of 6

2.33

1.62

0.00090

IPR019776

Flagellar basal body rod protein, conserved site

2 of 4

2.33

0.75

0.0425

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