ABP55325.1 protein (Salinispora tropica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABP55325.1

PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein. (462 aa)

Predicted Functional Partners:

ABP55326.1

0.996

ABP56533.1

0.880

ABP52822.1

0.826

ABP55014.1

0.824

ABP53103.1

0.820

ABP53667.1

0.820

ABP53443.1

0.813

ABP54159.1

0.807

ABP54900.1

0.799

ABP54581.1

0.798

Your Current Organism:

Salinispora tropica

NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABP52822.1	ABP55325.1	Strop_0337	Strop_2885	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.826
ABP52822.1	ABP56533.1	Strop_0337	Strop_4103	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP53103.1	ABP55325.1	Strop_0624	Strop_2885	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.820
ABP53103.1	ABP56533.1	Strop_0624	Strop_4103	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP53443.1	ABP55325.1	Strop_0967	Strop_2885	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.813
ABP53443.1	ABP56533.1	Strop_0967	Strop_4103	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP53667.1	ABP55325.1	Strop_1197	Strop_2885	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.820
ABP53667.1	ABP56533.1	Strop_1197	Strop_4103	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP54159.1	ABP55325.1	Strop_1695	Strop_2885	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.807
ABP54159.1	ABP56533.1	Strop_1695	Strop_4103	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP54581.1	ABP55325.1	Strop_2130	Strop_2885	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.798
ABP54581.1	ABP56533.1	Strop_2130	Strop_4103	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP54900.1	ABP55325.1	Strop_2454	Strop_2885	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.799
ABP54900.1	ABP56533.1	Strop_2454	Strop_4103	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP55014.1	ABP55325.1	Strop_2570	Strop_2885	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.824
ABP55014.1	ABP56533.1	Strop_2570	Strop_4103	PFAM: response regulator receiver; transcriptional regulator domain protein.	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	0.772
ABP55325.1	ABP52822.1	Strop_2885	Strop_0337	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	0.826
ABP55325.1	ABP53103.1	Strop_2885	Strop_0624	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.	0.820
ABP55325.1	ABP53443.1	Strop_2885	Strop_0967	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	PFAM: response regulator receiver; transcriptional regulator domain protein.	0.813
ABP55325.1	ABP53667.1	Strop_2885	Strop_1197	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.	PFAM: response regulator receiver; transcriptional regulator domain protein.	0.820

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About