STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55395.1Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase, family 48; PKD domain containing protein; cellulose-binding, family II. (966 aa)    
Predicted Functional Partners:
ABP55128.1
PFAM: glycoside hydrolase, family 5; cellulose-binding, family II; Fibronectin, type III domain protein.
  
 0.834
ABP55389.1
Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase, family 9; Carbohydrate-binding, CenC domain protein domain protein; glycoside hydrolase, family 9 domain protein Ig domain protein.
  
   
 0.764
ABP53546.1
PFAM: Ricin B lectin.
  
  
 0.754
ABP56840.1
PFAM: coagulation factor 5/8 type domain protein.
 
  
 0.732
ABP56105.1
PFAM: glycoside hydrolase, family 16; Carbohydrate binding family 6; SMART: cellulose binding, type IV.
 
   
 0.709
ABP56852.1
PFAM: Ricin B lectin; glycoside hydrolase, family 5; glycoside hydrolase, family 12; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
  
 0.684
ABP53627.1
Hypothetical protein.
  
  
 0.652
ABP56033.1
PFAM: glycoside hydrolase, family 6; cellulose-binding, family II; Belongs to the glycosyl hydrolase family 6.
 
    
0.481
ABP54515.1
PFAM: ROK family protein.
 
     0.465
ABP56833.1
Chitinase; PFAM: glycoside hydrolase, family 19; Carbohydrate-binding family V/XII.
  
   
 0.454
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.