STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55515.1TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein. (158 aa)    
Predicted Functional Partners:
ABP55516.1
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.998
ABP55514.1
PFAM: protein of unknown function DUF59.
 
    0.991
ABP55517.1
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.991
ABP53683.1
PFAM: aminotransferase, class V.
  
 0.990
ABP55735.1
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase.
  
 0.990
ABP55519.1
Iron-regulated ABC transporter permease protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.
 
  
 0.983
ABP52760.1
PFAM: aminotransferase, class V.
 
 
 0.980
ABP55520.1
Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
 
  
 0.980
ABP54232.1
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V.
 
 
 0.979
ABP54262.1
PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes.
 
 
 0.961
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.