STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55581.1PFAM: ABC transporter related; SMART: AAA ATPase. (307 aa)    
Predicted Functional Partners:
ABP55582.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
ABP54268.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
ABP55583.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
ABP53240.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
0.992
ABP54267.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.983
ABP53238.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.979
ABP55584.1
PFAM: Extracellular ligand-binding receptor.
 
  
 0.944
ABP55580.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
0.923
ABP54264.1
PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 
0.915
ABP53239.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.905
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.