STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55679.1PFAM: GCN5-related N-acetyltransferase. (189 aa)    
Predicted Functional Partners:
ABP55680.1
PFAM: protein of unknown function DUF422.
 
   
 0.920
ABP55681.1
PFAM: glycosyl transferase, family 2.
     
 0.907
ABP55678.1
Spheroidene monooxygenase.
     
 0.897
ABP55682.1
TIGRFAM: Phytoene dehydrogenase-related protein; PFAM: amine oxidase; FAD dependent oxidoreductase.
     
 0.891
ABP55677.1
PFAM: YbaK/prolyl-tRNA synthetase associated region.
       0.829
ABP55702.1
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.762
ABP53938.1
Hypothetical protein.
  
     0.735
ABP56249.1
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
  
     0.727
ABP56268.1
Hypothetical protein.
  
     0.715
ABP53452.1
Hypothetical protein.
  
     0.683
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.