Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABP55695.1PFAM: N-acylglucosamine 2-epimerase. (425 aa)    
Predicted Functional Partners:
ABP55694.1
PFAM: PfkB domain protein.
   
 0.925
orn
Exonuclease, RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
      0.890
ABP55696.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
   
 0.809
ABP55697.1
PFAM: binding-protein-dependent transport systems inner membrane component.
  
  
 0.782
ABP56018.1
PFAM: extracellular solute-binding protein, family 1.
   
 0.608
ABP55698.1
PFAM: extracellular solute-binding protein, family 1.
 
   
 0.607
ABP52911.1
PFAM: Aldose 1-epimerase.
 
  
 0.433
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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